Your next step, if not done yet, is verify there is voltage going to the injectors. Easiest way is with a fuel injector noid light which should cost about $15 at any store that sells automotive tools.
http://www.engine-misfire.com/how-to-check-fuel-injector-pulse-using-a-noid-light/The computer signals the injector to fire by grounding that injector. Since there is really no way to positively diagnose the computer itself you would need to trace for faults in the wiring . No wiring diagram? Look here
http://www.ducati.com/services/maintenance/index.do