You could have other issues or there can be no issue at all. First, charge that new Shorai. They do not like falling below 12.8 volts. Shorai says to not let it go below 13.1 volts. LiFePO
4 batteries cold performance characteristics are different than lead acid batteries. Cold cranking power actually improves after current is drawn from the battery for a period of time. Try turning the key on with the headlight on for about 30 seconds, then try starting the bike. On your SR2 that means turn the key on, then of, remove key, reinsert key, start bike.
Also, Shorai changed their recommendations for your bike. Check here:
http://shoraipower.com/