I did a complete disassembly, engine rebuild, and reassembly of my 2000 M750 dark a couple months ago. Definitely label ziplock bags to put small parts and bolts in, ziptie spacers to their parts, and take pictures as you go especially of wiring routing and definitely throttle cable routing. I forgot to take pics of the throttle cables and it took me several hours to figure it out.
I bout 4 eye-bolts and drilled holes in the ceiling joyces in the basement (walk-out basement), and threaded the bolts in. Then used rope to string up the front and ratcheting tie-downs for the rear attached to the passenger handles of the frame.
Start with the upper stuff; seat, tank, airbox, carbs, electronics and wiring harness, then rear suspension, then engine, then forks.
I also PC'ed my frame red and ceramic coated exhaust black, and regreased every bearing on the entire bike upon reassembly. Took 2 full days to disassemble completely, and 6 days to reassemble, with several days in between for engine overhaul and getting the frame and exhaust coated.
Make sure you have a manual, its very important to torque everything properly
and once the exhaust and rear suspension was off, I used a standard car floorjack to remove the motor. got the jack under the motor, lifted it a hair, removed the two bolts holding it to the frame, had a buddy lift the frame up off the motor while I balanced and lowered the motor down with the jack, rolled it out from under, and let the frame go back to hanging.
And yes, there are specific spacers on both wheels and the swingarm pivot at the motor. Dont lose them, and keep them in their exact locations and direction
Also, the bolts for the peg brackets are different sizes, for a reason, make sure you dont mix up the locations of those either. I didnt notice this either upon disassembly, and had to take a bit of extra time to figure out which ones went where again. some are different diameters, some are different lengths
here's a few pics from mine: